PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702002.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 275aa MW: 30771.9 Da PI: 6.1602

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702002.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	101.7	1.3e-31	51	146	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a+++i +l+ ++ + +++ ++++ss +as+ +s + + XP_020702002.1 51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAQHEINKLPPLEYPFENFIQPHQSSDQASKAKS------TYN 139 689*************************************************************9999988877777777662222......223 PP TCP 97 skksqks 103 + +s + XP_020702002.1 140 PDQSFDV 146 3333222 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MIKDTEEKER FPFTNPEGNT EIINNRTTTG SNSRLWSSLK DSRIVRVSKA FGGKDRHSKV 60 CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAQHEINK LPPLEYPFEN 120 FIQPHQSSDQ ASKAKSTYNP DQSFDVEEHN LGVESPALMF QDVGIYNAQS SFHQDHNLLS 180 NNSRGGGGDQ ALGLISNIGS FPYASFYHWD QSNRSYLSQF EIVSSQVDVA PASVISSYTT 240 STVPCELEGI SAQQNLPNNS DTIFRNSFSL SYSNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	3e-45	TCP family protein