PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702200.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 418aa MW: 46697.6 Da PI: 9.0338

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_020702200.1 71 FVCEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	12.2	0.00057	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_020702200.1 147 WKCEKCSKKYAVQSDWKAHSKIC 169 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MNGFTVPLHQ QLMEENMSNL TSASGDASFS SNPSPINPQA AKKKRNLPGN PDPEAEVIAL 60 SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYICPEVSCV 120 HHDPTRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARNMSAMN PLTNPLLFHP PPPPSFDPSS IPLQTHFPHL 240 IRTIANETYQ TNTCNNNSMN NNHTLQDLTL KTEQQQHQDF SLRPDIPSWL STTTTSSLYS 300 PVLEQDHFIH ESHQSLPPPQ SHISATALLQ KAAQMGSTMS RPSPIHSQMA GHSNGGLVLP 360 SSPVEKGFIN GSTASNHFLQ MMNSFTQGNG FRENDGRLEE GGNGGVGGGR KLHEFFII

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MNGFTVPLHQ QLMEENMSNL TSASGDASFS SNPSPINPQA AKKKRNLPGN PDPEAEVIAL  60
SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSNKEVRKK VYICPEVSCV  120
HHDPTRALGD LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARNMSAMN PLTNPLLFHP PPPPSFDPSS IPLQTHFPHL  240
IRTIANETYQ TNTCNNNSMN NNHTLQDLTL KTEQQQHQDF SLRPDIPSWL STTTTSSLYS  300
PVLEQDHFIH ESHQSLPPPQ SHISATALLQ KAAQMGSTMS RPSPIHSQMA GHSNGGLVLP  360
SSPVEKGFIN GSTASNHFLQ MMNSFTQGNG FRENDGRLEE GGNGGVGGGR KLHEFFII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	110	KLKQRSNKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-108	C2H2 family protein