PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702209.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 212aa MW: 22851.8 Da PI: 7.8252

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	140.8	4.3e-44	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrrkC++dCv+apyfp ++p+kf nvh++FGasnv+k+l++l++ +reda++sl+yeAe+r+rdPvyG+vg+i+ lq+ql+ql+ +l+ XP_020702209.1 33 PCAGCKFLRRKCQPDCVFAPYFPPDEPQKFVNVHRVFGASNVTKILNELHPLQREDAVNSLAYEAEMRLRDPVYGCVGIISVLQHQLRQLQMDLS 127 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_020702209.1 128 RARSE 132 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MEPLALSSIS NGHVAASNGA AVTGNGSQMV STPCAGCKFL RRKCQPDCVF APYFPPDEPQ 60 KFVNVHRVFG ASNVTKILNE LHPLQREDAV NSLAYEAEMR LRDPVYGCVG IISVLQHQLR 120 QLQMDLSRAR SELCKYQAAA AGMEQLWGPM GQNQQQQHQQ QQRVVMMRGY GGGPEVGGYD 180 VGLMTAAAFG GQFGRFSGAA GGDDRQSTLG SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	6e-60	LBD family protein