PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702244.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 310aa    MW: 35463.9 Da    PI: 7.4098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702244.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l +++  +G g+W++++r+ g+ R++k+c++rw +yl
   XP_020702244.1 14 RGLWSPEEDEKLTKYISTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding45.41.9e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E+ l++++++ lG++ W+ Ia+++  gRt++++k++w++
   XP_020702244.1  67 RGSFSPYEETLIIELHRILGNR-WAQIAKHLT-GRTDNEVKNFWNS 110
                      899*******************.********9.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MGHHSCCNKQ KVRRGLWSPE EDEKLTKYIS TYGHGCWSSV PRRAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPYEETLIIE LHRILGNRWA QIAKHLTGRT DNEVKNFWNS TIKKKLIAQA  120
VEGLSLPNLS NQIPPPQDLL PLRSFEFHTS HVQDQFQPAY NHPSIAAQIY NSQGLQPNME  180
NPAPTQPLQL SGSYSSILPS YPQQQQLHQH NHHEPNTFFD FVDPLRFHTE SKGGLIDTKI  240
GIAMDNQQVI NDQEWFSSLS SMPYLESSYG YSSLMEYMYV LTGSHDQSLA VVACDDLNSN  300
NTSIQPYLFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-75MYB family protein