PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702266.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 398aa MW: 44508.6 Da PI: 8.9598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	63	85	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F r nL+ H r H XP_020702266.1 63 FICEVCGKGFQRDQNLQLHRRGH 85 89*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MKGFAVKKTL DIDVCSDPTA SDHQACLSSI PKPTRKRRIP GTLDPNAEVI ALSPKSLLAT 60 NKFICEVCGK GFQRDQNLQL HRRGHNLPWK LKQRQNNEVV RRKVYICPEP SCSNHLPSRA 120 LGDLTGIKKH FFRKHGEKRW SCDKCSKKYA VLSDWKAHSK ICGSKEYRCE CGTIVSRRDS 180 FITHKAFCEV LALEKYTRTM SANQNLLHLP HPTDLPNLHI NNSFFSPGLR SEIPQWLPSI 240 PTSFGHHQIS NLNHSVYSLN SPSHFKPPPL PSDPNFSATA LLQKAAEIES TISRPSELHS 300 WLSSNSQEMS NGVFELGSSV SSPLQFHPFP SCSGFGSPFE ETVGGQLIMS PKRGERSAED 360 FLVGRNIVGD QGGRDETTRD FLGLRVPSHE ELFSLSEI

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MKGFAVKKTL DIDVCSDPTA SDHQACLSSI PKPTRKRRIP GTLDPNAEVI ALSPKSLLAT  60
NKFICEVCGK GFQRDQNLQL HRRGHNLPWK LKQRQNNEVV RRKVYICPEP SCSNHLPSRA  120
LGDLTGIKKH FFRKHGEKRW SCDKCSKKYA VLSDWKAHSK ICGSKEYRCE CGTIVSRRDS  180
FITHKAFCEV LALEKYTRTM SANQNLLHLP HPTDLPNLHI NNSFFSPGLR SEIPQWLPSI  240
PTSFGHHQIS NLNHSVYSLN SPSHFKPPPL PSDPNFSATA LLQKAAEIES TISRPSELHS  300
WLSSNSQEMS NGVFELGSSV SSPLQFHPFP SCSGFGSPFE ETVGGQLIMS PKRGERSAED  360
FLVGRNIVGD QGGRDETTRD FLGLRVPSHE ELFSLSEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-100	C2H2 family protein