PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702427.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 406aa MW: 46923.1 Da PI: 9.8613

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702427.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	353	393	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +eE el++++++ +G++ Wk a ++g +++ ++k+ w+ XP_020702427.1 353 KWKPEELELIKRYHAAHGPK-WKEMADMLG--KSRVHVKDAWRR 393 8***************99.999998..9******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MHKSSRHNRS EELTSSANFL DEGMSCSENR ATDGGFKEGR KYKEEHKKEK KKSNQKGITE 60 FNSLKNASDE EGANLEDEII LGGPMQIEKD KKRHKKKKGN YKENENSTTF TENCNWDEAK 120 EQDKKRKREG YFLEHELDKG SSKKMAKDAS KEAYKVISGG NAEELLSRAH LSNKDKRKEK 180 EKEYLASCTE LTPAMTTRKE KGDQRSTSST TKNFEKSKSD MNTLNTGKGC SINESYNCEL 240 KKDTKIGKKE VSFSDKVEFP LAQFINENLG PDNLVWGKRF TPEEDELIRN AVMDYIEANQ 300 LGEQGLRKVL HSRDYRREVK GCWKVIAAAL PWRPSINVSM RARILFERSE ERKWKPEELE 360 LIKRYHAAHG PKWKEMADML GKSRVHVKDA WRRIRLPNRK LGMLAC

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MHKSSRHNRS EELTSSANFL DEGMSCSENR ATDGGFKEGR KYKEEHKKEK KKSNQKGITE  60
FNSLKNASDE EGANLEDEII LGGPMQIEKD KKRHKKKKGN YKENENSTTF TENCNWDEAK  120
EQDKKRKREG YFLEHELDKG SSKKMAKDAS KEAYKVISGG NAEELLSRAH LSNKDKRKEK  180
EKEYLASCTE LTPAMTTRKE KGDQRSTSST TKNFEKSKSD MNTLNTGKGC SINESYNCEL  240
KKDTKIGKKE VSFSDKVEFP LAQFINENLG PDNLVWGKRF TPEEDELIRN AVMDYIEANQ  300
LGEQGLRKVL HSRDYRREVK GCWKVIAAAL PWRPSINVSM RARILFERSE ERKWKPEELE  360
LIKRYHAAHG PKWKEMADML GKSRVHVKDA WRRIRLPNRK LGMLAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	127	KRHKKKKGNYKENENSTTFTENCNWDEAKEQDKKRK
2	95	130	KRHKKKKGNYKENENSTTFTENCNWDEAKEQDKKRK
3	124	147	KKRKREGYFLEHELDKGSSKKMAK
4	125	148	KKRKREGYFLEHELDKGSSKKMAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	5e-37	MYB_related family protein