PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702436.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family CO-like
Protein Properties Length: 332aa    MW: 35517.8 Da    PI: 5.7711
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.5e-071762339
        zf-B_box  3 erkCpeHeeke...lqlfCedCqqllCedClleeHkg......Htv 39
                    +r C+ ++      ++lfC+ +  +lC +C    H+       H++
  XP_020702436.1 17 ARSCDACKGPTvasAILFCRADAAFLCGTCDARVHSAnklasrHER 62
                    578*****543344******************99965677777765 PP
2zf-B_box25.72.3e-0863108342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      + C+ +e+ ++   C+ +   lC +C   +H+       H+++p+
  XP_020702436.1  63 VWLCEVCEQSPADVTCKADAAALCSSCDADIHSAnplasrHQRIPI 108
                     689*****************************66899999999886 PP
3CCT69.87.1e-24256299144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_020702436.1 256 REARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 299
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MGVSEAGNGG TYWGLRARSC DACKGPTVAS AILFCRADAA FLCGTCDARV HSANKLASRH  60
ERVWLCEVCE QSPADVTCKA DAAALCSSCD ADIHSANPLA SRHQRIPIVP FFDSPTADST  120
AAADGCPDSF FSGDADTDTS WMLQVQPKDP PLEIPKTANC FFSEVNPYLD LEYASSVDAG  180
MYQSDSVVPA GGGVPTSFML DFAKPKNSYT CYNISPSMSS SEVAVVPDGE GCATADASTC  240
GGARSSSATA VSVMDREARV MRYREKRKNR RFEKTIRYAS RKAYAETRPR IKGRFAKRTE  300
IEAEVDRIYS SAAAATAAFL AADPLYGVVP SF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-71CO-like family protein