PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702494.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family TCP
Protein Properties Length: 310aa    MW: 35045.2 Da    PI: 7.321
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702494.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP921.2e-28611763113
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnss 86 
                     ++kdrhsk++T +g++dRRvRls+++a++++dLqd+LG+ ++sk ++WLl++++++i++l+ +           +        + +ssssa n++
  XP_020702494.1  61 KGKDRHSKVSTIRGLKDRRVRLSVPTAIQLYDLQDKLGLNQPSKVVDWLLNASQHEIDKLPPLplfpenliqfpQ--------TLASSSSAVNDG 147
                     68*************************************************************555555444431........333444444444 PP

             TCP  87 sgkaaksaa..kskksqksaasalnlake 113
                     ++++ +++    + +s++++  ++n+ ++
  XP_020702494.1 148 ITENFTDSDqiAQTFSNDQNVFNNNVVDD 176
                     44222222211222222222222222222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MAVSKTSYDE NHKMIKDSRE KEFLTKQDGG TSTDATKPKT STRLWSALRN PRVVRVSQTF  60
KGKDRHSKVS TIRGLKDRRV RLSVPTAIQL YDLQDKLGLN QPSKVVDWLL NASQHEIDKL  120
PPLPLFPENL IQFPQTLASS SSAVNDGITE NFTDSDQIAQ TFSNDQNVFN NNVVDDQNVA  180
QFQKTAYWNS DNFMRSRLAR DITFESGIDQ KGNSEKYPHD EMDSTLEYTF FHQFEPNVPQ  240
AEVAQGFLLA SGSPSLISLM PGSQPMMPSV FSLYGNNHNI FQMPSTFAQL LPLNSSRTSL  300
HAGREHERKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.12e-41TCP family protein