PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020702517.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 366aa MW: 41343.4 Da PI: 8.557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020702517.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	10	32	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ksFs+ +L H+r+H XP_020702517.1 10 HRCKICNKSFSSGRSLGGHMRSH 32 79********************8 PP
2	zf-C2H2	20	1.8e-06	86	106	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F+++ +L H+r H XP_020702517.1 86 CKECGKEFPSWKSLFGHMRWH 106 *******************99 PP
3	zf-C2H2	15.9	3.8e-05	289	311	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+Fs+ L H r+H XP_020702517.1 289 HECNICGKVFSSGQALGGHKRSH 311 78******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
METEKEQQKH RCKICNKSFS SGRSLGGHMR SHIHSSHSDA EEKEKLEGSR GQVGLGFGYG 60 LRENPKKTFK SSDFAGEDLA PSSKLCKECG KEFPSWKSLF GHMRWHSVKL NYPRSFEEEE 120 EGSWIEEKDS SESFSDENEQ TRFPIPVVPR RKRRSKRASP ASITGYEPEQ EDVAVILMML 180 SRDISEFSDK ISEQDSGDEL RKRKIMNPTV LGKKRAMLGD NGYPFNELNV LGSRYKCLTC 240 KKVFQSYHAL GGHRASHKRI RNCCRENPSF DIEASVENLG VVGQKSRIHE CNICGKVFSS 300 GQALGGHKRS HLISNIGGRE GGGDHQRIVV EHFSEPLDLN LPAPVVEGSS NLKAWWAELS 360 RKHEQH

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

METEKEQQKH RCKICNKSFS SGRSLGGHMR SHIHSSHSDA EEKEKLEGSR GQVGLGFGYG  60
LRENPKKTFK SSDFAGEDLA PSSKLCKECG KEFPSWKSLF GHMRWHSVKL NYPRSFEEEE  120
EGSWIEEKDS SESFSDENEQ TRFPIPVVPR RKRRSKRASP ASITGYEPEQ EDVAVILMML  180
SRDISEFSDK ISEQDSGDEL RKRKIMNPTV LGKKRAMLGD NGYPFNELNV LGSRYKCLTC  240
KKVFQSYHAL GGHRASHKRI RNCCRENPSF DIEASVENLG VVGQKSRIHE CNICGKVFSS  300
GQALGGHKRS HLISNIGGRE GGGDHQRIVV EHFSEPLDLN LPAPVVEGSS NLKAWWAELS  360
RKHEQH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	323	GGREGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-29	C2H2 family protein