PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702933.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 711aa    MW: 77775 Da    PI: 5.7864
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-203489156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q++e+e++F+ +++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_020702933.1 34 KKRYHRHTQHQIQEMEAFFKDCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 89
                    688999***********************************************999 PP
2START230.25.9e-722254471206
                     HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ela +a++el+++a+++ep+W++       e++n++e++q+f+++ +      ++ea+r+++vv+m +++lve+l+d + qW++++     + +t
  XP_020702933.1 225 ELAVAAMEELIRMAQLGEPLWSSPCldganEILNEEEYVQNFPRGIGpkpfgLKSEASRETAVVIMSHVNLVEILMDPN-QWSTMFSgivsRGMT 318
                     57899*****************9999******************999********************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     lev+s+g      galq+m+ae+q++splvp R+++fvRy++q+++g+w++vdvS+d  ++ +    ++R++++pSg+li++++ng+skv+wveh
  XP_020702933.1 319 LEVLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHPDGTWAVVDVSLDGLRPST---ALMRCRRRPSGCLIQEMPNGYSKVIWVEH 410
                     ************************************************************977...6**************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v++++r++h+++++lv+sg+a+gak+wv+tl+rqce+
  XP_020702933.1 411 VEVDDRSVHSIYKPLVNSGIAFGAKRWVSTLDRQCER 447
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    
MIRTREDDFE SKSGSDNIEG ASGDEQDPNQ RPRKKRYHRH TQHQIQEMEA FFKDCPHPDD  60
KQRKELSREL GLEPLQVKFW FQNKRTQMKT QHDRQENSQL RSDNDKLRNE NLRYKEALSN  120
ASCPNCGGPA ALGEMSFDEH HLRIENARLR EEIDRISGIA AKYVGKPMNS YSLLSPTLPS  180
RSPLDLGVGG FGLHSPTMGG EMFSAAELLR TVAGQPEVDK PMVIELAVAA MEELIRMAQL  240
GEPLWSSPCL DGANEILNEE EYVQNFPRGI GPKPFGLKSE ASRETAVVIM SHVNLVEILM  300
DPNQWSTMFS GIVSRGMTLE VLSTGVAGNY NGALQVMTAE FQVPSPLVPT RESYFVRYCK  360
QHPDGTWAVV DVSLDGLRPS TALMRCRRRP SGCLIQEMPN GYSKVIWVEH VEVDDRSVHS  420
IYKPLVNSGI AFGAKRWVST LDRQCERLAS VMASSIPSGE IGVITTPEGR KSMLKLAERM  480
VLSFCGGVSA STTHQWTTLS GSGAEDVRVM TRKSVDDPGR PPGIVLNAAT SFWLPVSPKR  540
VFDFLRDESS RSEWDILSNG GVVQEMAHIA NGRDHGNCVS LLRVNQSTNS NQSNMLILQE  600
SCTDPTGSYV IYAPVDVVAM NVVLNGGDPD YVALLPSGFA ILPDGSNGVQ GGGSGIGEVG  660
SGGSLLTVAF QILVDSIPTA KLSLGSVATV NSLIACTVER IKAAVSGENP Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein