PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703009.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 636aa MW: 69408.7 Da PI: 5.9017

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.4	2.2e-12	462	508	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er RR+++N++f Lr ++P+ K++Ka+ L A+ YI+++q XP_020703009.1 462 NHVEAERMRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEMQ 508 799*********************6.....5**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MNLWTDDNAS MMEAFMPTNE FHGLGWTPMP APAPAYFSQE TLQHRLQILI EGAKESWAYA 60 IFWQSSVDVG SGATLLGWGD GYYKGSEDDK RKRKANTAAS AAEQEHRKRV LRELNSLISG 120 GAGFSMDDAV EEEVTDSEWF FLVSMTQSFL NGTGVPGQVF FSGVPSWIAG GDRLAVAHCE 180 RALQAQTFGI QTMVCVPVAN GVVELGSTDT IFHSAEIMSK VKVVFSFNSF ENSAAASGGG 240 PGSWLPSHSF LPVATDQGEA DPSMWISDPS VIEIKDSVSP ATVEISAIKS PIMDNPSTSS 300 LTENRNLIPI PQPQQNHRQS LNLQQHRHHS LYGNEFNFSD FGLNSTVTSQ PLKPESGVIN 360 LGEKVRNSSS SGLSPHQQIT DVNKKSAAAT TSRGSNEEGM LSFSNGQVKP ATIASAAAGE 420 SDHSDLEASV REAESSRVVE PEKPRPRKRG RKPANGREEP LNHVEAERMR REKLNQRFYA 480 LRAVVPNVSK MDKASLLGDA ISYINEMQSK VEALESEKEG LQSQLENLMS KPPSQPPAEQ 540 GLNVINSTGR SSNVEVEVKI LGAEAMIRVQ CSRRNHPAAR LMASLKDLEL DLCHASFSVV 600 KELMNLQVTV KFSGRGYTQE QLSSILSSRL SEPSRR

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MNLWTDDNAS MMEAFMPTNE FHGLGWTPMP APAPAYFSQE TLQHRLQILI EGAKESWAYA  60
IFWQSSVDVG SGATLLGWGD GYYKGSEDDK RKRKANTAAS AAEQEHRKRV LRELNSLISG  120
GAGFSMDDAV EEEVTDSEWF FLVSMTQSFL NGTGVPGQVF FSGVPSWIAG GDRLAVAHCE  180
RALQAQTFGI QTMVCVPVAN GVVELGSTDT IFHSAEIMSK VKVVFSFNSF ENSAAASGGG  240
PGSWLPSHSF LPVATDQGEA DPSMWISDPS VIEIKDSVSP ATVEISAIKS PIMDNPSTSS  300
LTENRNLIPI PQPQQNHRQS LNLQQHRHHS LYGNEFNFSD FGLNSTVTSQ PLKPESGVIN  360
LGEKVRNSSS SGLSPHQQIT DVNKKSAAAT TSRGSNEEGM LSFSNGQVKP ATIASAAAGE  420
SDHSDLEASV REAESSRVVE PEKPRPRKRG RKPANGREEP LNHVEAERMR REKLNQRFYA  480
LRAVVPNVSK MDKASLLGDA ISYINEMQSK VEALESEKEG LQSQLENLMS KPPSQPPAEQ  540
GLNVINSTGR SSNVEVEVKI LGAEAMIRVQ CSRRNHPAAR LMASLKDLEL DLCHASFSVV  600
KELMNLQVTV KFSGRGYTQE QLSSILSSRL SEPSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-167	bHLH family protein