PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703050.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 291aa MW: 32526.7 Da PI: 4.5023

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703050.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.5	3e-20	68	121	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAkklgL+ rqV vWFqNrRa++k XP_020703050.1 68 KKRRLTTEQVQLLERSFETENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWK 121 56689************************************************9 PP
2	HD-ZIP_I/II	133.2	9.7e-43	67	158	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++ydal +++++L k++++Lr+++ XP_020703050.1 67 EKKRRLTTEQVQLLERSFETENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKSSYDALLADHDSLLKDNDRLRSQVV 158 69**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MDSRHLIFDS SSSHAGHMFF LGGSGSQIFR GGRSVLGFDD GANKRRPFFT TADELLEEEY 60 YDEQQSEKKR RLTTEQVQLL ERSFETENKL EPERKSDLAK KLGLQPRQVA VWFQNRRARW 120 KTKQLERDFD RLKSSYDALL ADHDSLLKDN DRLRSQVVSL TEMLQKELAV GGLKGDDDHQ 180 KATLLTEEEQ LSSPLAAAPT QQRSGDDRLS YKSKGNAIED TEGAAALQVD SSGDSYFQES 240 LIEGNAGCYL GAIEGGICSE EDAGSSDDGC SYLPGGMFVE ASGEENWWVW S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-69	HD-ZIP family protein