PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703152.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 242aa MW: 27111.2 Da PI: 4.6918

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703152.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.5e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l +++++G g+W++ ++ g+ R++k+c++rw +yl XP_020703152.1 16 RGAWTPEEDMRLMAYIRKFGHGNWRALPKQAGLLRCGKSCRLRWINYL 63 89****************************99**********97 PP
2	Myb_DNA-binding	46.4	9.2e-15	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e ++++ +lG++ W++Ia+ ++ gRt++++k+ w+++l XP_020703152.1 69 RGNFSIEEEETVIKLHGLLGNK-WSKIASSLP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MGRGRAPCCE KVGLNRGAWT PEEDMRLMAY IRKFGHGNWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDIKRG NFSIEEEETV IKLHGLLGNK WSKIASSLPG RTDNEIKNVW NTHLKKRLKS 120 NEQSSSSPTP TIVSTANADQ DTPASSSSSE TTSISIPSNL DFDDFNDSID EILAIDIEPE 180 VWNDVIVTEE ADAGEKRNWL AYLEEELGLF DDNGGGDDEN KMVEMVVVGE GDPVTSYFHK 240 SY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	120	LKKRLKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	5e-70	MYB family protein