PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703160.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 346aa MW: 38958.7 Da PI: 9.7788

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703160.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	144	197	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_020703160.1 144 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 197 9****************************************************7 PP
2	Myb_DNA-binding	47	6e-15	145	196	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_020703160.1 145 RMRWTSTLHARFVHAVELLGGHeraTPKSVLELMDvKDLTLAHVKSHLQMYR 196 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MELFPAQPDL SLQISPPSSS KPSSRWSNGS TEETIDLGFW RRTAASATPL LPAKSSDGAG 60 TIGFDLSLTN PSPSTATISH PPPLLHESQR QDLAFLRPIR GIPVYHTSPS FPFPPPHHVH 120 LFDSTRSPSR FLPRFPAKRS MRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV 180 KDLTLAHVKS HLQMYRTVKT TDKAATSSGQ SEPIEISDDN LFDSHNSPGT DHSSVQNLRP 240 ADQNSTKSYG LWSSSSSRGD CYPDKLKEST IGSLPCFERI VQRSSILISL WEGHSDQTLH 300 EKDDDVMKRR QSFDFLNQRK KKEDKEKKSL KERESRVQGE REREMK

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MELFPAQPDL SLQISPPSSS KPSSRWSNGS TEETIDLGFW RRTAASATPL LPAKSSDGAG  60
TIGFDLSLTN PSPSTATISH PPPLLHESQR QDLAFLRPIR GIPVYHTSPS FPFPPPHHVH  120
LFDSTRSPSR FLPRFPAKRS MRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV  180
KDLTLAHVKS HLQMYRTVKT TDKAATSSGQ SEPIEISDDN LFDSHNSPGT DHSSVQNLRP  240
ADQNSTKSYG LWSSSSSRGD CYPDKLKEST IGSLPCFERI VQRSSILISL WEGHSDQTLH  300
EKDDDVMKRR QSFDFLNQRK KKEDKEKKSL KERESRVQGE REREMK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	322	KRRQSFDFLNQRKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	3e-51	G2-like family protein