PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703175.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 214aa    MW: 23369.8 Da    PI: 8.4222
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.71.2e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++Cvl+p++     p++q +++ +v+k+FG++ ++++++a+pe +r+++++sl+yeA+ r+ +Pv+Gavg++ + +++l+q+
  XP_020703175.1   2 SCNGCRVLRKGCSESCVLRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPEPQRPALFQSLLYEACGRTINPVNGAVGLLATRNWNLCQA 96 
                     6********************************************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e +l+
  XP_020703175.1  97 AVEKVLR 103
                     9997765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MSCNGCRVLR KGCSESCVLR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPEPQR  60
PALFQSLLYE ACGRTINPVN GAVGLLATRN WNLCQAAVEK VLRGGTLCPL PELTGTHAGN  120
VFTEADGDGE IYAKPRNGWP PSFSAAKRRK VPIVGDRSQP PCDLDLCLTP QSPSAAVRED  180
KRRPLSPSMN SEESVTTMED SFRDRRPRLL NLLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-77LBD family protein