PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703217.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 398aa    MW: 43448.4 Da    PI: 8.1258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12325370655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  XP_020703217.1 325 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 370
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MYGSPSAATT KGLNLQFTTA AAAFGHRKED SDLQREQEMN SGLLRFSSAP TTLLGEVCED  60
FQPVRPSSPE MESLFARFLA QNQREEIRSK STAGSGQGQR NTLFTPAAVE QSEGFSSMSS  120
QMLYHSQQQQ PMADNAYRVV SSMAMETDQM KPGGASSANL IRQSSSPAGF LSNLNVDSGY  180
GLLRGMSASS NRNGMGADFK GQINFSSRQN SLSQISEMGS EGISGGGGGS PEESSNGHCF  240
IPGYPVNSWE DSLLSDNFSP RESKRARDVV GLNQTELQNG AGLTHQFSLP KTTSEMAAIE  300
KFLHFQDSVP CKIRAKRGCA THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD  360
LAVDYIKDLQ RQVKSISDIR ASCTCSVSKQ KPYQNQAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-66bHLH family protein