PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703261.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 653aa MW: 74172.4 Da PI: 4.9121

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.3e-14	451	497	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h ErrRR+++N++f Lr+l+P+ + K++Ka+iL ++eY+k+L+ XP_020703261.1 451 NHVLSERRRREKLNEKFLILRSLVPSiS------KVDKASILADTIEYLKELE 497 78899*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
METEMQSQED LQRNHFTKQL AACVRRIQWT YGIFWSKSSR DEGSLEWNDG YYNGGIKTRK 60 TTQQIDCKED QMDLQRSEQL GELYESLCTG DCNQQNRPSA SLSPEDLTDA EWYYLVCMSF 120 TFNIGQDLPG KVYERNEPIW LNNAQLSENI CFCRSLLAKN ASIKTVLCLP FMDGVLELGT 180 SELVLEDPGL VHSITNSFWE FEVPGFSEHS TLSSPLEEED NVCLISDHEV LDTIFPSSVD 240 SYASNKNSEL IHDNDNMNHQ SIYKEMIDIP EDCSICADPL NIKRLTEPSQ VHIRHLMADE 300 FGNGLNSSLN FSECVSSSFA QKILSSLKGK GVKSNLFDHP QEDDHSKIGS LGIEEDDSHN 360 VSTIYTIPGN LNQGILSTGF PFQNGPHGSS FKVWERGPTT SEIFIKIPQR MLKKLLFDSN 420 WMNGGQSMQP HEENMPRNKA FKSEADDVNS NHVLSERRRR EKLNEKFLIL RSLVPSISKV 480 DKASILADTI EYLKELEKRV EELEFCREEL HHDMRERRKH PDIIERTSDN YGSNELISCP 540 KPSTTKRKAC EINDSEAEHQ LLSSTNVVTD INVTMIGKEA LIELHCPWRD FLLLDIIEAM 600 SNLHLDAHSV RSSTVDSTAA IALRAKFMST TMASPGMIKR SLQRVIGKEH INL

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

METEMQSQED LQRNHFTKQL AACVRRIQWT YGIFWSKSSR DEGSLEWNDG YYNGGIKTRK  60
TTQQIDCKED QMDLQRSEQL GELYESLCTG DCNQQNRPSA SLSPEDLTDA EWYYLVCMSF  120
TFNIGQDLPG KVYERNEPIW LNNAQLSENI CFCRSLLAKN ASIKTVLCLP FMDGVLELGT  180
SELVLEDPGL VHSITNSFWE FEVPGFSEHS TLSSPLEEED NVCLISDHEV LDTIFPSSVD  240
SYASNKNSEL IHDNDNMNHQ SIYKEMIDIP EDCSICADPL NIKRLTEPSQ VHIRHLMADE  300
FGNGLNSSLN FSECVSSSFA QKILSSLKGK GVKSNLFDHP QEDDHSKIGS LGIEEDDSHN  360
VSTIYTIPGN LNQGILSTGF PFQNGPHGSS FKVWERGPTT SEIFIKIPQR MLKKLLFDSN  420
WMNGGQSMQP HEENMPRNKA FKSEADDVNS NHVLSERRRR EKLNEKFLIL RSLVPSISKV  480
DKASILADTI EYLKELEKRV EELEFCREEL HHDMRERRKH PDIIERTSDN YGSNELISCP  540
KPSTTKRKAC EINDSEAEHQ LLSSTNVVTD INVTMIGKEA LIELHCPWRD FLLLDIIEAM  600
SNLHLDAHSV RSSTVDSTAA IALRAKFMST TMASPGMIKR SLQRVIGKEH INL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	456	461	ERRRRE
2	457	462	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	1e-125	bHLH family protein