PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703378.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 261aa    MW: 28770.9 Da    PI: 6.5223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703378.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-11141188455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  XP_020703378.2 141 SHSLAERARREKISERMKILQDLVPGC----NKVIGKAAVLDEIINYIQALQ 188
                     8*************************9....677*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDPSSLISHS ALPEIWHFPM ARGIRETALG MGHRDVSAGE STVTEQSGDL WSKKKRRDSG  60
LSSAAASEDE SSKFLSNSSG GNDLDDSEAL HLKEGKSRGE NGEWKADVEA SSTGKKPDQT  120
LEPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL QDLVPGCNKV IGKAAVLDEI  180
INYIQALQRQ VELLSMKLEA VNSRINAGME GFPSKDFGAQ TYHTPSSSGF PSQPTREYER  240
EQGSTTEWLH MQVGGTFQRV T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15357KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.17e-72bHLH family protein