PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703395.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 342aa    MW: 38297.4 Da    PI: 5.7834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000422372741254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A eYIk L
  XP_020703395.1 237 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEANEYIKFL 274
                     677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MEEKSQSSNW WNTSRTSSFN CNTPTASSSL SSSAKTVASV TATSFMDSSL HFSSFSLSSS  60
SPMDWSQSLL SNSSGRAESC TFHSMLEETA TDTEEPSGIT FRDMNDPLLL ETGNCSRVTR  120
TFLLTSSSSS FFDSQQMTNY QSQMIQKQSD INQLQFTRNS NFWNASDHAA MNEMRTGFCS  180
SSDDVILKPF DLKPAGCSDQ TVMNTEAAKE KKTRYEYTMK KPRMEETPSP LPAFKVRKEK  240
LGDRITALQQ LVSPFGKTDT ASVLHEANEY IKFLYDQVNV LSTPYLKNGK LKQQRQRSDN  300
SNDEEQDLKS RGLCLVPIAS AYSVASEISS DFWTPTFKGT YR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-47bHLH family protein