PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703403.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 198aa    MW: 22728.9 Da    PI: 5.8191
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703403.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.8e-17671131056
                     HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      q+++Le+ F  ++ +   ++++LA+ lgL+ +qV vWFqNrRa++k
  XP_020703403.2  67 PQVRALEQSFDVENRLEPXRKARLAQDLGLQPCQVAVWFQNRRARWK 113
                     699*******************************************9 PP
2HD-ZIP_I/II98.46.7e-3267149987
     HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeen....erLekeveeL 87 
                      qv++LE+sF+ e++Lep rK++la++Lglqp qvavWFqnrRAR+ktk lE+ ++aLk++ydal+ +     ++L+++v++L
  XP_020703403.2  67 PQVRALEQSFDVENRLEPXRKARLAQDLGLQPCQVAVWFQNRRARWKTKPLERVFSALKSRYDALRLDFdfdfDSLRSQVAAL 149
                     59***************************************************************986511115666666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    
MATKKVEGLE ERFKGDMCQM KSMVEGQISS VEDKVSSVED KVFDLHVMMK KLLENIIQMA  60
ASETKGPQVR ALEQSFDVEN RLEPXRKARL AQDLGLQPCQ VAVWFQNRRA RWKTKPLERV  120
FSALKSRYDA LRLDFDFDFD SLRSQVAALK LGELVPPNWR EIAHGMLAER ALEHILPSEE  180
DFPYIVRVES TITESNGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-26HD-ZIP family protein