PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703639.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 522aa MW: 57942.4 Da PI: 9.3572

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.9	9.7e-12	6	49	37	86
trihelix 37 kmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 k+ e+g+ers+k+Ckek+en+ k+yk++ke + + +t+++f+qle XP_020703639.1 6 KLTEEGYERSAKKCKEKFENVFKYYKRTKEARAG------KTYRFFSQLE 49 6789***************************998......4799999998 PP
2	trihelix	104.3	8.9e-33	304	389	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++r+ me+++ ++ k+plWee+s+ m + g+ rs+k+Ckekwen+nk+ykk+ke++k+r +e+ +tcpyf+ql+a XP_020703639.1 304 RWPKSEVHALINLRSGMESKYLDSIPKGPLWEEISACMGRLGYDRSAKRCKEKWENINKYYKKVKESNKNR-PEDAKTCPYFHQLDA 389 8******************************************************************98.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MGTGLKLTEE GYERSAKKCK EKFENVFKYY KRTKEARAGK TYRFFSQLEA LRSSSSSSVA 60 GAPPLPPTIA NSSATMVNIE ASSSGAAAPS PHTLLSVTVR PPPPPAAGPI TTTTIPPPPT 120 DAADGPSSSS NTSSYSGTES EDEDGGEASR KRKRERREAP EGSGKMMAFF EGLIKEVMDQ 180 QETMLQRFLE AIERREQNRM IREEAWRRQE KSRISREHEL VAQERAAAAS RDDAIISFLQ 240 KLTGQKIPIP PPPQPPETTV DPAEETPTSP PPPPRPEDPD QPPKETTLGS SSRRTIEAPI 300 LSSRWPKSEV HALINLRSGM ESKYLDSIPK GPLWEEISAC MGRLGYDRSA KRCKEKWENI 360 NKYYKKVKES NKNRPEDAKT CPYFHQLDAL YRAKILGGSS SAGTAGQTLS TDDHQLAISS 420 PTAAIIKQQD DRMSFFEQGS SSASLVKKPE DIVKKKIEQA VVESESKKME TGVSFRFRMQ 480 QYIMPRVLIS GGTGQQLVGH GPVERSIPLF YFFYIYINII HN

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MGTGLKLTEE GYERSAKKCK EKFENVFKYY KRTKEARAGK TYRFFSQLEA LRSSSSSSVA  60
GAPPLPPTIA NSSATMVNIE ASSSGAAAPS PHTLLSVTVR PPPPPAAGPI TTTTIPPPPT  120
DAADGPSSSS NTSSYSGTES EDEDGGEASR KRKRERREAP EGSGKMMAFF EGLIKEVMDQ  180
QETMLQRFLE AIERREQNRM IREEAWRRQE KSRISREHEL VAQERAAAAS RDDAIISFLQ  240
KLTGQKIPIP PPPQPPETTV DPAEETPTSP PPPPRPEDPD QPPKETTLGS SSRRTIEAPI  300
LSSRWPKSEV HALINLRSGM ESKYLDSIPK GPLWEEISAC MGRLGYDRSA KRCKEKWENI  360
NKYYKKVKES NKNRPEDAKT CPYFHQLDAL YRAKILGGSS SAGTAGQTLS TDDHQLAISS  420
PTAAIIKQQD DRMSFFEQGS SSASLVKKPE DIVKKKIEQA VVESESKKME TGVSFRFRMQ  480
QYIMPRVLIS GGTGQQLVGH GPVERSIPLF YFFYIYINII HN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-56	Trihelix family protein