PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703664.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 916aa MW: 100383 Da PI: 7.4433

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703664.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60	4.2e-19	366	465	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_020703664.1 366 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGIPLKIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 458 99************************666778899***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_020703664.1 459 LVMGFRK 465 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 916 aa Download sequence
MSTKRCMNGV CGAAAAAGAV WRKGWLLRSG GFATLCDKCG LAYEKLVFCE SFHQKESGWR 60 ECAFCGKRLH CGCIASKSML DLLDGGGVQC LMCLKNYGNS SIPGEPVHDL LPQSSQRILA 120 LSARCSINEK MNEFGTPPVN GSSELQITCS DRIITDDATT KCNLMHLGRD IDVNGYNTML 180 LAQRESTNGS FSHVKKEQFA FNRGDLGRSG CSGKGQGTLG LPQSYGSDSK DALKDYLSNP 240 LAEACLSMSL GGSNTGNILE ACSNAGARQI TLSHHGIVDD GRDQSKVLAT FQNVQRARHV 300 LPKLPKAIHG VTSDASKELV PQMRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS 360 TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG IPLKIQDAKG KEWHFQFRFW 420 PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTV PLQEAQISAL 480 ATGALGSETF YSSVNVNLLV SGYSGLLQSL KGTGDPQLSH FSENLIYADG DVCCIKTDKH 540 GSWANEGLLQ PLLTPEKRRS RNIGSKSKRL LIDDEDAMEL KLSWEEAQDL LRPPPRVQPS 600 IVIIEDQEFE EYEEPPVLGK RTFFTARTSG GQDQWIQCDD CLKWRRIPVE FLPPSKWTCT 660 ENTWDLKRSS CAVPDELTAR EVQDLLRQHA ELKRQRITSS KQSPSEAEST GLDALATAVA 720 QGEAGNQASP SAAATTRHPR HRPGCTCIVC IQPPSGKGPK HSPSCTCNVC MTVKRRFKTL 780 MMRKKKRQSE REEAEVNKKQ SWGSREELEG TSSSLKEREG DLLEGHIDLN CQPQRDAEQR 840 VTDSPSLPQM SMMSLLQVAS LPLENYLKQN RLASLTTSDQ QVSSGSATVP QAPIESESGG 900 DDDQCGSDKV RTDAAI

Sequence ? help Back to Top

Protein Sequence Length: 916 aa Download sequence

MSTKRCMNGV CGAAAAAGAV WRKGWLLRSG GFATLCDKCG LAYEKLVFCE SFHQKESGWR  60
ECAFCGKRLH CGCIASKSML DLLDGGGVQC LMCLKNYGNS SIPGEPVHDL LPQSSQRILA  120
LSARCSINEK MNEFGTPPVN GSSELQITCS DRIITDDATT KCNLMHLGRD IDVNGYNTML  180
LAQRESTNGS FSHVKKEQFA FNRGDLGRSG CSGKGQGTLG LPQSYGSDSK DALKDYLSNP  240
LAEACLSMSL GGSNTGNILE ACSNAGARQI TLSHHGIVDD GRDQSKVLAT FQNVQRARHV  300
LPKLPKAIHG VTSDASKELV PQMRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS  360
TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG IPLKIQDAKG KEWHFQFRFW  420
PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTV PLQEAQISAL  480
ATGALGSETF YSSVNVNLLV SGYSGLLQSL KGTGDPQLSH FSENLIYADG DVCCIKTDKH  540
GSWANEGLLQ PLLTPEKRRS RNIGSKSKRL LIDDEDAMEL KLSWEEAQDL LRPPPRVQPS  600
IVIIEDQEFE EYEEPPVLGK RTFFTARTSG GQDQWIQCDD CLKWRRIPVE FLPPSKWTCT  660
ENTWDLKRSS CAVPDELTAR EVQDLLRQHA ELKRQRITSS KQSPSEAEST GLDALATAVA  720
QGEAGNQASP SAAATTRHPR HRPGCTCIVC IQPPSGKGPK HSPSCTCNVC MTVKRRFKTL  780
MMRKKKRQSE REEAEVNKKQ SWGSREELEG TSSSLKEREG DLLEGHIDLN CQPQRDAEQR  840
VTDSPSLPQM SMMSLLQVAS LPLENYLKQN RLASLTTSDQ QVSSGSATVP QAPIESESGG  900
DDDQCGSDKV RTDAAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	774	785	KRRFKTLMMRKK
2	774	787	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-180	B3 family protein