PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703835.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WRKY

Protein Properties

Length: 237aa MW: 27221 Da PI: 10.5461

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34.2	5.1e-11	107	129	1	23
---SS-EEEEEEE--TT-SS-EE CS WRKY 1 ldDgynWrKYGqKevkgsefprs 23 ldDgy+WrKYGqK vk+s +pr XP_020703835.1 107 LDDGYRWRKYGQKAVKNSIHPRE 129 59*******************96 PP
2	WRKY	102.1	3.2e-32	157	215	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ XP_020703835.1 157 LDDGYRWRKYGQKAVKNSIHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHNHP 215 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MEQYLEAGDL PPLFPDHNYF SPSPLLPSDF FHQEAALPPS ALTPPLLLPN GISASLMEER 60 EKLREEGEGN VNGVGERREK RKAVSGRGKK VSRPRFAFQT RSANDILDDG YRWRKYGQKA 120 VKNSIHPREK RKAVSGRGKK VSRPRFAFQT RSANDILDDG YRWRKYGQKA VKNSIHPRSY 180 YRCTHHTCNV KKQVQRLSKD TSIVVTTYEG VHNHPCEKLM EALSPLLKQI QFLTTRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-55	WRKY family protein