PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703872.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 228aa MW: 24137.2 Da PI: 8.1431

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+Fs+ L H +H XP_020703872.1 98 YKCKTCDKCFSSFQALGGHRASH 120 9***********99999998887 PP
2	zf-C2H2	14.2	0.00013	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg Fs+ L H+r+H XP_020703872.1 154 HQCSVCGAEFSSGQALGGHMRRH 176 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MVHSISSSSI GESSSPSPSP SPVIFKRKRT KRYRAFAPPP STAATATAAS SASSNTTEED 60 HDMADCLMLL AQGPPVPFNE AAAPLLKPTG PAGVAIVYKC KTCDKCFSSF QALGGHRASH 120 KKPKLTPFET ELLGTMAKPI ANSSSSAGGK KRTHQCSVCG AEFSSGQALG GHMRRHRPAL 180 LLENKLETNR TENKVLLLDL NLPAPADDDP FAADDDDDGA SRSQLLEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KKRTH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	6e-34	C2H2 family protein