PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704155.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family BBR-BPC
Protein Properties Length: 312aa    MW: 34743.9 Da    PI: 10.3438
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind309.98.5e-95233121301
       GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdnklla 83 
                     md+d+    +n+g yy+    +k nlglqlmss+ er++k   + +   e  + + +r+          m+f  rd++ ++      +rd+  + 
  XP_020704155.1  23 MDEDAALGiQNWGgYYRTP-PMKGNLGLQLMSSVGERNTKSFFSGV---EAGGGYLHREcgitepstmpMDF-TRDMWYHN------NRDSSKML 106
                     8999998889***788766.9*******************966666...66777777777788888899***.9*******......67765555 PP

       GAGA_bind  84 lllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
                      +++ n   +++++++++l    s++s q+     l++  v+ +e+  l ++p+  + + +  kkk+k   ++++ k+ k kk+kk ++  +++v
  XP_020704155.1 107 HVFQGNH--HQHSHNYEALLPEASAHSFQM-----LQQVEVPREEKAPLLEEPVAPQLDAEPLKKKSK--GQGRSSKTLKPKKTKKAKAPREESV 192
                     5554443..333344555555567788999.....566666666677777777766555544444444..4455555555555555333444555 PP

       GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLa 273
                     ++++   r ++ kks+d+v+ng++lD s++P+PvC+CtG+++qCY+WG+GGWqSaCCtt+iS yPLP+stkrrgaRiagrKmSqgafkk+LekLa
  XP_020704155.1 193 NPSG---RGRSVKKSMDMVINGIDLDLSGMPTPVCTCTGQPQQCYRWGAGGWQSACCTTSISLYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLA 284
                     5555...78************************************************************************************** PP

       GAGA_bind 274 aeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     +eG d+s p+DLk +WAkHGtnkfvtir
  XP_020704155.1 285 GEGEDFSSPIDLKLFWAKHGTNKFVTIR 312
                     ***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MSALRPRVAA KNPRKKPPNK IWMDEDAALG IQNWGGYYRT PPMKGNLGLQ LMSSVGERNT  60
KSFFSGVEAG GGYLHRECGI TEPSTMPMDF TRDMWYHNNR DSSKMLHVFQ GNHHQHSHNY  120
EALLPEASAH SFQMLQQVEV PREEKAPLLE EPVAPQLDAE PLKKKSKGQG RSSKTLKPKK  180
TKKAKAPREE SVNPSGRGRS VKKSMDMVIN GIDLDLSGMP TPVCTCTGQP QQCYRWGAGG  240
WQSACCTTSI SLYPLPMSTK RRGARIAGRK MSQGAFKKVL EKLAGEGEDF SSPIDLKLFW  300
AKHGTNKFVT IR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.12e-75BBR-BPC family protein