PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704204.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 559aa MW: 62178.1 Da PI: 5.289

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704204.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.9e-12	506	553	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 +rWT+ E+ l +av+++G+g+Wk+I ++ Rt+ ++k++w++ XP_020704204.2 506 KRWTQLEEHTLREAVAKYGKGNWKLILNRHSeifGERTEVDLKDKWRN 553 69***********************998889999*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence
MAAPSSSSSS FPTLLRHPLS SPTTRPPADD LANTWILEFI LRQPIPDFLA NEIFLSLHFS 60 SSNLHPHLRK TVLLRRISSD LRRRSLSERT LHSLELIVEL DRHSGSRPSH RLKAAYCATA 120 VECTAAAFFR SGRDSIDFVE RFWMAEAAEG LVSEQLIEWR KRMERCLSSG ERGEEILKRD 180 AEDAMSSVRD YLEEALQDMG PPFLEIAAAE FVGKRLDLNA VVDKVGKVFT EMNVCFEELD 240 ETDDELETDG GRISMGIMEE GGVVERSGGM TDTSRRDLRV GGIREESDGL GKASAMQGAD 300 FNGVVGSGFD SVEMEVEDNE KGVNYIPDHS GCNILQVAPD EVSKVKDALK KSSFDLKRMV 360 EDPLPEAQAV AAAVLDSISR VHDNEAEKQI SVENPVLPVS PVDPVAGNPP GMGCSTDDLE 420 KEKWNLSVFK QMEGNHIDAG PSKRREVVAN HGISERNPTA HISESIEDSL ESSVPTEKLK 480 SPNPTSRGNS LARLCKGKLI KRRAVKRWTQ LEEHTLREAV AKYGKGNWKL ILNRHSEIFG 540 ERTEVDLKDK WRNMARHLL

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence

MAAPSSSSSS FPTLLRHPLS SPTTRPPADD LANTWILEFI LRQPIPDFLA NEIFLSLHFS  60
SSNLHPHLRK TVLLRRISSD LRRRSLSERT LHSLELIVEL DRHSGSRPSH RLKAAYCATA  120
VECTAAAFFR SGRDSIDFVE RFWMAEAAEG LVSEQLIEWR KRMERCLSSG ERGEEILKRD  180
AEDAMSSVRD YLEEALQDMG PPFLEIAAAE FVGKRLDLNA VVDKVGKVFT EMNVCFEELD  240
ETDDELETDG GRISMGIMEE GGVVERSGGM TDTSRRDLRV GGIREESDGL GKASAMQGAD  300
FNGVVGSGFD SVEMEVEDNE KGVNYIPDHS GCNILQVAPD EVSKVKDALK KSSFDLKRMV  360
EDPLPEAQAV AAAVLDSISR VHDNEAEKQI SVENPVLPVS PVDPVAGNPP GMGCSTDDLE  420
KEKWNLSVFK QMEGNHIDAG PSKRREVVAN HGISERNPTA HISESIEDSL ESSVPTEKLK  480
SPNPTSRGNS LARLCKGKLI KRRAVKRWTQ LEEHTLREAV AKYGKGNWKL ILNRHSEIFG  540
ERTEVDLKDK WRNMARHLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-11	MYB_related family protein