PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704206.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 558aa MW: 62049 Da PI: 5.3692

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704206.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.4	5.9e-12	505	552	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 +rWT+ E+ l +av+++G+g+Wk+I ++ Rt+ ++k++w++ XP_020704206.2 505 KRWTQLEEHTLREAVAKYGKGNWKLILNRHSeifGERTEVDLKDKWRN 552 69***********************998889999*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MAAPSSSSSS FPTLLRHPLS SPTTRPPADD LANTWILEFI LRQPIPDFLA NEIFLSLHFS 60 SSNLHPHLRK TVLLRRISSD LRRRSLSERT LHSLELIVEL DRHSGSRPSH RLKAAYCATA 120 VECTAAAFFR SGRDSIDFVE RFWMAEAAEG LVSEQLIEWR KRMERCLSSG ERGEEILKRD 180 AEDAMSSVRD YLEEALQDMG PPFLEIAAAE FVGKRLDLNA VVDKVGKVFT EMNVCFEELD 240 ETDDELETDG GRISMGIMEE GGVVERSGGM TDTSRRDLRV GGIREESDGL GKASAMQGAD 300 FNGVVGSGFD SVEMEVDNEK GVNYIPDHSG CNILQVAPDE VSKVKDALKK SSFDLKRMVE 360 DPLPEAQAVA AAVLDSISRV HDNEAEKQIS VENPVLPVSP VDPVAGNPPG MGCSTDDLEK 420 EKWNLSVFKQ MEGNHIDAGP SKRREVVANH GISERNPTAH ISESIEDSLE SSVPTEKLKS 480 PNPTSRGNSL ARLCKGKLIK RRAVKRWTQL EEHTLREAVA KYGKGNWKLI LNRHSEIFGE 540 RTEVDLKDKW RNMARHLL

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MAAPSSSSSS FPTLLRHPLS SPTTRPPADD LANTWILEFI LRQPIPDFLA NEIFLSLHFS  60
SSNLHPHLRK TVLLRRISSD LRRRSLSERT LHSLELIVEL DRHSGSRPSH RLKAAYCATA  120
VECTAAAFFR SGRDSIDFVE RFWMAEAAEG LVSEQLIEWR KRMERCLSSG ERGEEILKRD  180
AEDAMSSVRD YLEEALQDMG PPFLEIAAAE FVGKRLDLNA VVDKVGKVFT EMNVCFEELD  240
ETDDELETDG GRISMGIMEE GGVVERSGGM TDTSRRDLRV GGIREESDGL GKASAMQGAD  300
FNGVVGSGFD SVEMEVDNEK GVNYIPDHSG CNILQVAPDE VSKVKDALKK SSFDLKRMVE  360
DPLPEAQAVA AAVLDSISRV HDNEAEKQIS VENPVLPVSP VDPVAGNPPG MGCSTDDLEK  420
EKWNLSVFKQ MEGNHIDAGP SKRREVVANH GISERNPTAH ISESIEDSLE SSVPTEKLKS  480
PNPTSRGNSL ARLCKGKLIK RRAVKRWTQL EEHTLREAVA KYGKGNWKLI LNRHSEIFGE  540
RTEVDLKDKW RNMARHLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	2e-11	MYB_related family protein