PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704219.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 108aa    MW: 11870.3 Da    PI: 7.8416
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11958248
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                      +W++ Ed+ + +a + +G +   +W+++a+ +g g+t  +++ ++q +l
   XP_020704219.1  9 SKWSAKEDKEFERALATFGEHtpnRWEKVAAAIGGGKTVADVRRHYQLLL 58
                     69*****************99**************************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    
MASYYATTSK WSAKEDKEFE RALATFGEHT PNRWEKVAAA IGGGKTVADV RRHYQLLLDD  60
IDSIESGLVP FPNYRTHPAP PSAASAAAAA ASFLNDDRQR GLVHLQLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-28MYB_related family protein