PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704243.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 243aa    MW: 26802 Da    PI: 9.0684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.5e-11105149347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+  ++ + ++lG+g W  I+r +  +Rt+ q+ s+ qky
   XP_020704243.1 105 PWSEEEHRAFLAGLEKLGKGYWCGISRNFVITRTPTQVASHAQKY 149
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRRCSHCGN NGHNLRTCRS SRSMVGGAGL RLFGVQLQLD SSAPMNKSIS LDSLCTSDYS  60
ASVSSSSSSS TSSFFCIDEA SEMVSNGSLS ESLIWKVQEK KKGVPWSEEE HRAFLAGLEK  120
LGKGYWCGIS RNFVITRTPT QVASHAQKYF LRQNSPDKTK RRTSLFDVVG SERPVQAKNS  180
SNVKDPSLLK DTPISKQALN TLSSGFIDLK FPEQEPESEQ KPNLPHRIHL HTNSSHVPDP  240
EQN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-46MYB_related family protein