PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704279.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 192aa    MW: 20842.9 Da    PI: 8.8171
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.72e-43211201100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca+dC++apyfpa++p+kfanvh++FGasnv kll+++p  +r da+sslvyeA+ar+rdPvyG+v+ i++lq+q++ l+a+la
  XP_020704279.1  21 PCAACKLLRRRCAQDCIFAPYFPADEPQKFANVHRVFGASNVNKLLQEVPVGRRIDAVSSLVYEANARVRDPVYGCVAAISSLQRQINILHAQLA 115
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+++e
  XP_020704279.1 116 LAQAE 120
                     *9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MGKEVREMFR KPGSCDGVVW PCAACKLLRR RCAQDCIFAP YFPADEPQKF ANVHRVFGAS  60
NVNKLLQEVP VGRRIDAVSS LVYEANARVR DPVYGCVAAI SSLQRQINIL HAQLALAQAE  120
MVRIRLHHAS YVSHSSTAAT AAVTPLTGGT SSSSATATPS DVARADIATA KPLFSYDMLL  180
EHAHGGQPMW SY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.19e-57LBD family protein