PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704404.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 196aa    MW: 20728.5 Da    PI: 9.0826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-142168254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +r+h+e+Er+RR+riN  +++Lr+llP+a      +++Ka+ L ++v+++++L
  XP_020704404.1 21 CRSHSEAERKRRQRINGHLATLRSLLPSA-----SRMDKATLLGEVVRHVREL 68
                    789*************************9.....7***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
METDGAVLPI AASCSPAVRS CRSHSEAERK RRQRINGHLA TLRSLLPSAS RMDKATLLGE  60
VVRHVRELRG IADDVATSAV PSEGDEVGVD DDVAEGGGGR VRAWVCCADR PGLMAELSQA  120
VGSARAKAVR AEMTTVGGRT RSVLELELLG GPTPIGGEAR SAIQAALREV LLADRTGSTD  180
RFKRQRLSTR FGTSAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERKRRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.15e-27bHLH family protein