PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704772.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 324aa MW: 36507.8 Da PI: 8.9951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	116	167	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ h ++Er+RR+++N+ ++ Lr+l+P++ + +K + a+i A++++k+L+ XP_020704772.1 116 QRMIHIAVERNRRKQMNDYLAVLRSLMPSS---YVQKADQASIIGGAINFVKELE 167 6999************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MALDAIVFPH GPFGCSLKEM YSFQGDSWGW ELADQLVEDD KKQTLYWEAS CSSMRQGLEH 60 WNVSSSTAPE VEVAASAALA TLQKDDVKKR ASNINYGQRK RRRRQRMKNK EDVENQRMIH 120 IAVERNRRKQ MNDYLAVLRS LMPSSYVQKA DQASIIGGAI NFVKELEHLV QSLQVHKQLK 180 QQQEENRDQN LSTANLLANF FRFPQFSSTA TAASAEAIAS TTIKSSELAM AKPSALADIE 240 VTMVESHANL KLLLKQRPKQ LLKLVIGLQN LRLTATHLNV TTVKPMVLYF FGLKVEEDSG 300 LASVDDIASS VHRMLEKIIE EIGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	104	KKRASNINYGQRKRRRR
2	98	104	QRKRRRR
3	99	103	RKRRR
4	99	106	RKRRRRQR
5	117	128	RMIHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	3e-57	bHLH family protein