PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704947.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LSD
Protein Properties Length: 248aa    MW: 26610.2 Da    PI: 4.559
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.39.4e-12172195124
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                     Cg+C  lLsYPrG++ V+Ca+C+t
  XP_020704947.1 172 CGSCNELLSYPRGSKFVQCACCQT 195
                     ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGSSPDSIPP GWEEAITSSP ETLPPGFENP STLSTPTSPP QENPSSSLPS PASPPLHENH  60
VNLTQRLPSP SPSTTPPQES QSHQLPPFLK SPQENRGPLP HPLWPLPQET PVPLSPSLPP  120
LPQEKLDAMP RPPLQSQDSQ GLLPSSKLPL GNMDSLNLPP PQSLPEMGQM VCGSCNELLS  180
YPRGSKFVQC ACCQTANFVL EALLESTQQA DDSQSLLGAV QACERMSIAI PLQKQPSSTP  240
KLRAFCFM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.11e-12LSD family protein