PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020704956.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 225aa    MW: 25604.8 Da    PI: 9.9406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020704956.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-14171218347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E+e l++av+++G+g+WktI  + +   + Rt+ ++k++w++ 
   XP_020704956.1 171 KWTLLEEETLLKAVREHGKGNWKTILICYPsifEERTEVDLKDKWRNM 218
                      8*********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRNTLLDAS NKAIELQAVN PEEAYSGELR ANDVQNRRDE IASTSKIGTK HTSIEGNEKI  60
ATLNKHQKPS CLKEKEVNQN GQDGRAKMAS LEKVPDIPPD GKNYSTQNNS SSASLPRASL  120
MERNPTAHTL EWTDSPRPEG RIHLHSPTRE PVSPLNLIGD KRYAKRRKVR KWTLLEEETL  180
LKAVREHGKG NWKTILICYP SIFEERTEVD LKDKWRNMTR SSWPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.18e-11MYB_related family protein