PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704995.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 340aa MW: 38337.7 Da PI: 7.8908

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704995.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.1	3.1e-16	29	74	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+WT+ Ed +l+++v+++G g+W+ + g+ Rt+k+c++rw + XP_020704995.1 29 RGPWTPAEDTILKEYVRKHGAGNWNVLQKNSGLQRTGKSCRLRWVN 74 89******************************************87 PP
2	Myb_DNA-binding	44.7	3.2e-14	83	126	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ E+ l++ ++ +lG++ W+ Ia++++ gRt++++k++w+++ XP_020704995.1 83 ESFSPYEETLILLLHDELGNR-WAQIAKHLP-GRTDNEIKNYWNTL 126 679999*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MRPPLKKERA STAVAGGGAS ATTQQLQKRG PWTPAEDTIL KEYVRKHGAG NWNVLQKNSG 60 LQRTGKSCRL RWVNNFRPNL KKESFSPYEE TLILLLHDEL GNRWAQIAKH LPGRTDNEIK 120 NYWNTLINRR KRAGLPMYRL ENQQHMPLKS QRQEQCIAIS PPALKPSQAI LSSLPSAMPQ 180 LSENQCVSIR QCPNRGNNIS FQLPYFTYPV ENCLGYFDLG PPPYAVTKEL PSSQFSSNFG 240 DEQMPQGSSR LLDDLLHVID LYGIEVIEET LKADIPTLVD LILRETTAPT SLTVLPGWYN 300 HSSGVGEFLN DPMAVITDKE IGLDVQQLEW IPTVAPVEFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	1e-53	MYB family protein