PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705077.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 514aa MW: 56491.2 Da PI: 9.3142

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_020705077.1 80 FICEVCNKGFQREQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	12.7	0.00038	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_020705077.1 156 WKCDKCSKRYAVQSDWKAHSKTC 178 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MAAASSSSPF FGIRDEESLN HLKQQQMLPV LPPTSSIPSS SSNLQVPAPV KKKRNLPGNP 60 NPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSNKEVRRRV 120 YLCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAQE SARIPTGITN ISSHFYSGAA INLGLSQVNP 240 HLSSLHNQTH PPTSATGGAA DLLRLGDHLI SPSQPSSFRS THPPPSPSFF LSTDNFQNKP 300 PFHTLMQLPD LQPNSTSSST PNLFNQSPHH LLMMQDQFPS NNPEPSNLYD QMGGGMQALF 360 NTSLQNDSVN LPQMSATALL QKAAQMGATS SNNSIKGFGS SSSTRSHVEN ENHLQDIMNS 420 FANGNSGIFS RRGDQEAKFG DYNAGFCHID EGSYHNNGLT RDFLGVGNLL RSMGGGISSQ 480 REQQHHGAID ISGSLDSEMK PASSTRSFAS GTLR

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MAAASSSSPF FGIRDEESLN HLKQQQMLPV LPPTSSIPSS SSNLQVPAPV KKKRNLPGNP  60
NPDAEVIALS PKTLMATNRF ICEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KSNKEVRRRV  120
YLCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKRYAVQSD WKAHSKTCGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAQE SARIPTGITN ISSHFYSGAA INLGLSQVNP  240
HLSSLHNQTH PPTSATGGAA DLLRLGDHLI SPSQPSSFRS THPPPSPSFF LSTDNFQNKP  300
PFHTLMQLPD LQPNSTSSST PNLFNQSPHH LLMMQDQFPS NNPEPSNLYD QMGGGMQALF  360
NTSLQNDSVN LPQMSATALL QKAAQMGATS SNNSIKGFGS SSSTRSHVEN ENHLQDIMNS  420
FANGNSGIFS RRGDQEAKFG DYNAGFCHID EGSYHNNGLT RDFLGVGNLL RSMGGGISSQ  480
REQQHHGAID ISGSLDSEMK PASSTRSFAS GTLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-122	C2H2 family protein