PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705095.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 501aa MW: 55544.1 Da PI: 8.4441

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	81	103	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_020705095.1 81 FICEVCNKGFQREQNLQLHRRGH 103 89*******************88 PP
2	zf-C2H2	12.8	0.00037	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_020705095.1 157 WKCDKCSKRYAVQSDWKAHSKTC 179 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MAAASSSTSF FGIINEDHLN QLKHHPPLPS QHHAPATAGQ QLPSSATTNP PKKKRNLPGN 60 PNPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSSKEVRRR 120 VYLCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG 180 TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESSRLPTIGS HFYRSNNNNN NFALGHHLSS 240 LHYQNQNHQI SPDLLRLGGT AAASCQTFSA GPQYIDHLHP PPPPSNSFFL TGDDSLQSKA 300 SFQGLMHLPD LQPNLGFFSV NNNQSAHLME NEQVINNSGN LMNDQMHALL NNAVLPHMSA 360 TALLQKAAEM GATSSLGEQS LRSQVENHEK QLMDIMNSFA NGNSGVFGGG GEEDEEVKFG 420 EFDNAGLCNM EEGRYQNNGL TRDFLGVGSM LRSMGGGMAL DNGEVNKSLS SNRLFHTGSF 480 ASGRREIEEE KMRQNGGNEF R

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MAAASSSTSF FGIINEDHLN QLKHHPPLPS QHHAPATAGQ QLPSSATTNP PKKKRNLPGN  60
PNPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLK QKSSKEVRRR  120
VYLCPEPSCV HHDPSRALGD LTGIKKHFSR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  180
TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESSRLPTIGS HFYRSNNNNN NFALGHHLSS  240
LHYQNQNHQI SPDLLRLGGT AAASCQTFSA GPQYIDHLHP PPPPSNSFFL TGDDSLQSKA  300
SFQGLMHLPD LQPNLGFFSV NNNQSAHLME NEQVINNSGN LMNDQMHALL NNAVLPHMSA  360
TALLQKAAEM GATSSLGEQS LRSQVENHEK QLMDIMNSFA NGNSGVFGGG GEEDEEVKFG  420
EFDNAGLCNM EEGRYQNNGL TRDFLGVGSM LRSMGGGMAL DNGEVNKSLS SNRLFHTGSF  480
ASGRREIEEE KMRQNGGNEF R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14580.1	1e-120	C2H2 family protein