PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705288.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 361aa MW: 40504 Da PI: 8.9329

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.9e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_020705288.1 32 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP
2	Myb_DNA-binding	70	3.9e-22	34	85	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e+++++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_020705288.1 34 RLRWTVELHDRFVDAVAQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 85 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MFSSKKPTMN SHERPPMCVQ GDSGLVLTTD PKPRLRWTVE LHDRFVDAVA QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSKD ALDMQRNAAS SSGIMSRTAM 120 NNDRNVQITE ALRMQKEVQR RLHEQLEVQK HLQMRIEAQG KYMQSILEKA YQSLAGEGAM 180 IATGSYKDLQ NQATMNQLGA MAFPSLQDLH LFNNDQLEIS PQLDRPLEDF FPSNEIALCL 240 GKKRPNPYSY SNGKSPLIWS DELKLQEFGS HEENLKNNID HEHLQIAPSI INGGMEMESM 300 ADVYEAKPVL SVDSNGEKYE GSSKVGRPSS APRRATVSTP ERMSPMIRGG GLGQTRNLSY 360 A

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MFSSKKPTMN SHERPPMCVQ GDSGLVLTTD PKPRLRWTVE LHDRFVDAVA QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSKD ALDMQRNAAS SSGIMSRTAM  120
NNDRNVQITE ALRMQKEVQR RLHEQLEVQK HLQMRIEAQG KYMQSILEKA YQSLAGEGAM  180
IATGSYKDLQ NQATMNQLGA MAFPSLQDLH LFNNDQLEIS PQLDRPLEDF FPSNEIALCL  240
GKKRPNPYSY SNGKSPLIWS DELKLQEFGS HEENLKNNID HEHLQIAPSI INGGMEMESM  300
ADVYEAKPVL SVDSNGEKYE GSSKVGRPSS APRRATVSTP ERMSPMIRGG GLGQTRNLSY  360
A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-105	G2-like family protein