PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705290.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 353aa MW: 39604 Da PI: 8.933

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_020705290.1 32 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP
2	Myb_DNA-binding	70	3.8e-22	34	85	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e+++++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_020705290.1 34 RLRWTVELHDRFVDAVAQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 85 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MFSSKKPTMN SHERPPMCVQ GDSGLVLTTD PKPRLRWTVE LHDRFVDAVA QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSKD ASSSGIMSRT AMNNDRNVQI 120 TEALRMQKEV QRRLHEQLEV QKHLQMRIEA QGKYMQSILE KAYQSLAGEG AMIATGSYKD 180 LQNQATMNQL GAMAFPSLQD LHLFNNDQLE ISPQLDRPLE DFFPSNEIAL CLGKKRPNPY 240 SYSNGKSPLI WSDELKLQEF GSHEENLKNN IDHEHLQIAP SIINGGMEME SMADVYEAKP 300 VLSVDSNGEK YEGSSKVGRP SSAPRRATVS TPERMSPMIR GGGLGQTRNL SYA

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MFSSKKPTMN SHERPPMCVQ GDSGLVLTTD PKPRLRWTVE LHDRFVDAVA QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSKD ASSSGIMSRT AMNNDRNVQI  120
TEALRMQKEV QRRLHEQLEV QKHLQMRIEA QGKYMQSILE KAYQSLAGEG AMIATGSYKD  180
LQNQATMNQL GAMAFPSLQD LHLFNNDQLE ISPQLDRPLE DFFPSNEIAL CLGKKRPNPY  240
SYSNGKSPLI WSDELKLQEF GSHEENLKNN IDHEHLQIAP SIINGGMEME SMADVYEAKP  300
VLSVDSNGEK YEGSSKVGRP SSAPRRATVS TPERMSPMIR GGGLGQTRNL SYA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-100	G2-like family protein