PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705381.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 585aa MW: 62270 Da PI: 6.0527

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.3e-08	200	244	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r+ WT+eEd l+ av+++G +W+ I + Rt+ q+ rw XP_020705381.1 200 RKLWTKEEDMELIAAVEKFGESNWANILKGDFkHDRTASQLSQRW 244 567************************974223566666666666 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MTAYRSKGTV SEDEVYALVQ RYGASTIFTL LQEVSQATEK DVTMDWRTLV KATSTGISNA 60 QEYQMLWRHL AYRDPLEKIE DGGEPLSDES DLEFELEATP NHSEEISTEV DCCVKVILSS 120 GSVGECGTVF PLNAEAPPAT DTVNDQASVV PSDKQHLGRY NRANGAALCT QKQSPSTGLS 180 NEGVDGNGSS NSGFHAKKKR KLWTKEEDME LIAAVEKFGE SNWANILKGD FKHDRTASQL 240 SQRWSIIRKR QTSSKQSNGS KARSEEMLAA QKAFSMAINM PMSGSLSTIL SGGTHMQTAN 300 SSASIAGGTS GALDESPACA SQAFKPNQPI NLETSSQKVP PNPSNKPRTA QKKPPSAQLK 360 PAICPNPLIK AAAFAAGGRI ATPLTAASLF KAAQSVNAVR IRHAGSSSLI GSSVTGTISS 420 SSTTAATTTA ATAPITGSHT PNSKFSHPSS GLTTSKLCQV QQGSGKAPLQ QLSSESRLGV 480 MTSCGRNENG KRRRSVNNSA VDVDQLLVEE AVAEPDDEAS DKLVQDTKNG SSDRKIEENQ 540 CTETEETTSK NLKEEQSGEG KGRIVEVISP NSGDSQLEEE VILHS

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MTAYRSKGTV SEDEVYALVQ RYGASTIFTL LQEVSQATEK DVTMDWRTLV KATSTGISNA  60
QEYQMLWRHL AYRDPLEKIE DGGEPLSDES DLEFELEATP NHSEEISTEV DCCVKVILSS  120
GSVGECGTVF PLNAEAPPAT DTVNDQASVV PSDKQHLGRY NRANGAALCT QKQSPSTGLS  180
NEGVDGNGSS NSGFHAKKKR KLWTKEEDME LIAAVEKFGE SNWANILKGD FKHDRTASQL  240
SQRWSIIRKR QTSSKQSNGS KARSEEMLAA QKAFSMAINM PMSGSLSTIL SGGTHMQTAN  300
SSASIAGGTS GALDESPACA SQAFKPNQPI NLETSSQKVP PNPSNKPRTA QKKPPSAQLK  360
PAICPNPLIK AAAFAAGGRI ATPLTAASLF KAAQSVNAVR IRHAGSSSLI GSSVTGTISS  420
SSTTAATTTA ATAPITGSHT PNSKFSHPSS GLTTSKLCQV QQGSGKAPLQ QLSSESRLGV  480
MTSCGRNENG KRRRSVNNSA VDVDQLLVEE AVAEPDDEAS DKLVQDTKNG SSDRKIEENQ  540
CTETEETTSK NLKEEQSGEG KGRIVEVISP NSGDSQLEEE VILHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	3e-54	MYB_related family protein