PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705400.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 467aa MW: 51955.4 Da PI: 6.0871

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705400.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.1	8e-07	242	263	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_020705400.1 242 FCSICGKGFKRDANLRMHMRGH 263 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MERKLRPSEI SASSLSSASN PSLNLDLNYS FTQMSSNGLC FNLQAENSRL LPLEIQSFLL 60 NSSRDQIVRN STGDWDVKTI LNNLSFLEQK IHQVQDIIGS IVNEKSEITL RPNEFAIQQQ 120 IVTTDLTSII VDLISTAGNL LPSIKKNLLS SKPPPDQFCS KLSSSTSLKV DTPLPKYEQT 180 SLEKEKSASL GDCDGEPHEL DHIEDHDVKG SEDGAELDNL PLGSYEVLQL EKEEILAPHT 240 HFCSICGKGF KRDANLRMHM RGHGDEYKTP AALAKPMKDS DSTIIKRYSC PFVGCKRNKE 300 HKSFQPLKTL LCVRNHYKRS HCEKSYMCGR CLTKKFSVLA DLKTHEKHCG LDKWLCSCGT 360 TFSRKDKLFG HVALFQGHSP VLPTDEGCYG SGSAEHRNDY KVGVEEDGIG YFFSSNSDNG 420 VIYDTQTCDD GLGYLSTLSF EPNDYGVSDE FMKATSGLIE NSSFLSS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MERKLRPSEI SASSLSSASN PSLNLDLNYS FTQMSSNGLC FNLQAENSRL LPLEIQSFLL  60
NSSRDQIVRN STGDWDVKTI LNNLSFLEQK IHQVQDIIGS IVNEKSEITL RPNEFAIQQQ  120
IVTTDLTSII VDLISTAGNL LPSIKKNLLS SKPPPDQFCS KLSSSTSLKV DTPLPKYEQT  180
SLEKEKSASL GDCDGEPHEL DHIEDHDVKG SEDGAELDNL PLGSYEVLQL EKEEILAPHT  240
HFCSICGKGF KRDANLRMHM RGHGDEYKTP AALAKPMKDS DSTIIKRYSC PFVGCKRNKE  300
HKSFQPLKTL LCVRNHYKRS HCEKSYMCGR CLTKKFSVLA DLKTHEKHCG LDKWLCSCGT  360
TFSRKDKLFG HVALFQGHSP VLPTDEGCYG SGSAEHRNDY KVGVEEDGIG YFFSSNSDNG  420
VIYDTQTCDD GLGYLSTLSF EPNDYGVSDE FMKATSGLIE NSSFLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-138	C2H2 family protein