PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705490.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 384aa MW: 42934.5 Da PI: 5.9673

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.9e-31	254	309	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF+ a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_020705490.1 254 KARRCWSPELHRRFIIALQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 309 68****************************************************97 PP
2	Myb_DNA-binding	39.1	1.7e-12	256	307	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ +++ a +qlGg t+k I + m g+t ++ks++qky+ XP_020705490.1 256 RRCWSPELHRRFIIALQQLGGAqvaTPKQIRELMKvDGLTNDEVKSHLQKYR 307 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence
MGSLAPELGL DLKLFTKRTI FSCLKDEIPD GSRASKLEDF ARRLEEERRK IEAFQRELPL 60 CMLLLADVIG GLKLEMDQCQ SGGSDDCVLE EFIPLQTRSD GYKEEKKAIN LEEKSKEKME 120 WMSSAQLWSD NLSYESIDCK EYSQEQKKDE GSHSRRDCDA LSLESKSDGA FLPFTAMPAP 180 RKEEENLSIP LPDLSFVPLP IKVPCSAPMA VTREEDNHSS GLNSKAVTIA SSSTGNNQLG 240 LMPQQQYQQH PQRKARRCWS PELHRRFIIA LQQLGGAQVA TPKQIRELMK VDGLTNDEVK 300 SHLQKYRLHT RRVPTSAANQ VNRPVVMVGG LWVSQDHCST SQQNASQSRS PQGPLQLTCT 360 AQALSVTGGD SCDDDGKSES YSWK

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence

MGSLAPELGL DLKLFTKRTI FSCLKDEIPD GSRASKLEDF ARRLEEERRK IEAFQRELPL  60
CMLLLADVIG GLKLEMDQCQ SGGSDDCVLE EFIPLQTRSD GYKEEKKAIN LEEKSKEKME  120
WMSSAQLWSD NLSYESIDCK EYSQEQKKDE GSHSRRDCDA LSLESKSDGA FLPFTAMPAP  180
RKEEENLSIP LPDLSFVPLP IKVPCSAPMA VTREEDNHSS GLNSKAVTIA SSSTGNNQLG  240
LMPQQQYQQH PQRKARRCWS PELHRRFIIA LQQLGGAQVA TPKQIRELMK VDGLTNDEVK  300
SHLQKYRLHT RRVPTSAANQ VNRPVVMVGG LWVSQDHCST SQQNASQSRS PQGPLQLTCT  360
AQALSVTGGD SCDDDGKSES YSWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-56	G2-like family protein