PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020705822.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ERF
Protein Properties Length: 251aa    MW: 28723.6 Da    PI: 9.744
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020705822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19103153256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                     +++GVr+++ +g+W+AeIrdp     +  kr++lg+f+taeeAa  ++ a+ kl+ge
  XP_020705822.1 103 RFRGVRRRP-WGKWAAEIRDP-----HrrKRVWLGTFDTAEEAAVVYDSAAVKLKGE 153
                     79*******.**********6.....226*************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MEIPSRIHHL DFPDLPVKFS EHILTKTRKM ISAGKTRGLR RRLVRIVFAD EDATDSSSSD  60
EDNVPFTRRR VKRHVHEIGF EIGPRFRRPT PAKRRAEDRD PKRFRGVRRR PWGKWAAEIR  120
DPHRRKRVWL GTFDTAEEAA VVYDSAAVKL KGENALTNFP HGKLQSPAEA GSTEKSVKET  180
SPPFASPTSV LRIAVEQTPF DCLGYGDVDA FGLSVEPPLY LTEFSLPKRQ CWEMEFGDFN  240
AEDFSLEVVT F
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194111RRAEDRDPKRFRGVRRRP
2108127RRRPWGKWAAEIRDPHRRKR
3124151RRKRVWLGTFDTAEEAAVVYDSAAVKLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-36ERF family protein