PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705912.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LSD

Protein Properties

Length: 168aa MW: 17633.7 Da PI: 8.7734

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705912.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38	2.7e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA +V+Ca+C+ V XP_020705912.1 7 CSGCRIPLLYPRGAANVCCAICNMV 31 ***********************98 PP
2	zf-LSD1	41.2	2.7e-13	44	68	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC++lL+Y rGA+ VRC++C+t+ XP_020705912.1 44 CGGCQILLMYARGASTVRCSCCNTI 68 ***********************97 PP
3	zf-LSD1	45.2	1.5e-14	82	106	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C V XP_020705912.1 82 CGHCRTTLMYPYGAPSVKCAVCRYV 106 **********************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence
MQSQLICSGC RIPLLYPRGA ANVCCAICNM VTAVPSADMA QIICGGCQIL LMYARGASTV 60 RCSCCNTINV ARAANQVAQL SCGHCRTTLM YPYGAPSVKC AVCRYVTNVG MSNTRPSTPI 120 PPTTAPVSIS ATRKPSNNVT VVVENPMSVN ENGKLVSNVV VGVTTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-65	LSD family protein