PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020706049.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23192.8 Da    PI: 4.6512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020706049.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-183991456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++ +eq+++Le+ F  ++ +  e++++LA+ lgL+ rqV vWFqNrRa++k
  XP_020706049.1 39 KRRLGTEQVRALEQSFDVENRLEPERKARLAQDLGLQPRQVAVWFQNRRARWK 91
                    456889**********************************************9 PP
2HD-ZIP_I/II129.81.1e-4138129293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl +eqv++LE+sF+ e++LeperK++la++LglqprqvavWFqnrRAR+ktkqlE+d++aLk++ydal+ + ++L++++++L ++l++
  XP_020706049.1  38 KKRRLGTEQVRALEQSFDVENRLEPERKARLAQDLGLQPRQVAVWFQNRRARWKTKQLERDFSALKSRYDALRLDFDSLRRDNHSLVAQLAA 129
                     9**************************************************************************************99975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MRHPAFFPCE EKSADMIFED DDDDVICCGG AANAAGAKKR RLGTEQVRAL EQSFDVENRL  60
EPERKARLAQ DLGLQPRQVA VWFQNRRARW KTKQLERDFS ALKSRYDALR LDFDSLRRDN  120
HSLVAQLAAL KSKLAGEGEI RQGEEKPQPA IGVDGACESD SSAVLTQDVF KVEEDWEETC  180
GAGFFADVHG PTMAWFSADL AVDGGGGGW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16369ERKARLA
28694RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.29e-47HD-ZIP family protein