PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020706092.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 123aa    MW: 14017.1 Da    PI: 10.1902
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020706092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s
  XP_020706092.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFCSS  60
SSFIEGRSDW LVSEKQTNEK STHGFSYVSK ISESRPKPSV NLLAIPESEL AVEKQPKHLP  120
FSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.34e-39MIKC_MADS family protein