PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020706103.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 514aa MW: 56695.6 Da PI: 4.5772

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020706103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.7	1.2e-35	40	132	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+++++++sw +nsfvv++ ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F kg+k+ll++ XP_020706103.1 40 FLSKTYDMVDDPATDSIVSWGPGNNSFVVWNVPEFSRDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLKGQKHLLKN 125 9*******************99*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k + XP_020706103.1 126 INRRKPS 132 **975 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MNEDMEGVPA AVGGEGMTVG APAPAPVVNA TLNVSAPPPF LSKTYDMVDD PATDSIVSWG 60 PGNNSFVVWN VPEFSRDLLP KHFKHNNFSS FVRQLNTYGF RKVDPDKWEF ANEGFLKGQK 120 HLLKNINRRK PSSAHSQQQM LPPNTPSSAL GACVEVGKFG LEEEIERLKR DKNVLMQELV 180 RLRHQQQGTD NQLQTLTQRL QGMEQRQQQM MSFLAKAMQS PGFLAQIVQQ NDSNRRIVGV 240 GKKRRLPKQE NKLEGESSAS PDGQIIKYQP LMTEAAKSLL MQILKLDSSP MLESRGNAEG 300 FLIDNFSSHN GLSASENRNS WVTLKEVPAT SVPPYLPQSS GFPAIHPSSA GIADIPATSG 360 IHDIDLLSVV PEPMSSSSTN MSAHESTKVP GMMPTDDHLD VAVDAFAPLE PNIFLGEFAV 420 VDESVPIETE NFSLDSEIDI PIGDDSKLPC INDSFWEQFL MESSLSGDVA EQVDDSSIQE 480 TSDMTPETEN VWDSTHHMQH LTEQMELLSQ EAKK

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MNEDMEGVPA AVGGEGMTVG APAPAPVVNA TLNVSAPPPF LSKTYDMVDD PATDSIVSWG  60
PGNNSFVVWN VPEFSRDLLP KHFKHNNFSS FVRQLNTYGF RKVDPDKWEF ANEGFLKGQK  120
HLLKNINRRK PSSAHSQQQM LPPNTPSSAL GACVEVGKFG LEEEIERLKR DKNVLMQELV  180
RLRHQQQGTD NQLQTLTQRL QGMEQRQQQM MSFLAKAMQS PGFLAQIVQQ NDSNRRIVGV  240
GKKRRLPKQE NKLEGESSAS PDGQIIKYQP LMTEAAKSLL MQILKLDSSP MLESRGNAEG  300
FLIDNFSSHN GLSASENRNS WVTLKEVPAT SVPPYLPQSS GFPAIHPSSA GIADIPATSG  360
IHDIDLLSVV PEPMSSSSTN MSAHESTKVP GMMPTDDHLD VAVDAFAPLE PNIFLGEFAV  420
VDESVPIETE NFSLDSEIDI PIGDDSKLPC INDSFWEQFL MESSLSGDVA EQVDDSSIQE  480
TSDMTPETEN VWDSTHHMQH LTEQMELLSQ EAKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-122	HSF family protein