PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020706105.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GATA
Protein Properties Length: 318aa    MW: 34173.9 Da    PI: 6.7944
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020706105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.9e-18216250135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  XP_020706105.1 216 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 250
                     *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MARQWEMEFG MGVGMPAGFG SASAPAYIYG VPAAAETTLR VDELLDFSHH DLFASSSSSS  60
SVAAEANLVP AAQFSAGHVS NPEYHYPRHA SFADDIYIPS DEVAELEWLS KFVEDSFSDV  120
PVQSLAAETA LPNATAHRAD VSNVVRGARS KRSRGVLTVV ESEANHHAAS AWSSLTPSSS  180
TTSSSSSSDF PTTKGSSRKK LATGETVEDG GGVRQCTHCA SEKTPQWRTG PLGPKTLCNA  240
CGVRFKSGRL VPEYRPAASP TFVLTQHSNS HRKVMELRRQ KELLILRRHD NASPSATFPS  300
ASIASAGTEM IYQDYNVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.11e-63GATA family protein