PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273845.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 246aa MW: 27722.3 Da PI: 10.5432

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273845.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27	8.1e-09	84	129	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er RR+ri + ++ Lr++lP++ K++Ka++L ++++ +++L XP_021273845.1 84 RHRIAERHRRKRICQQYDILRSILPNL-----IKMDKASVLGETIRQVREL 129 599*********************9.....6**********988877 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MFDTSILIYE EQFLLEANLR SSMVRLKQLE QDIQQPVGGY YSSALCSRPN SLSQQVIPTI 60 DILLKCLPRK TKSKAETNIA NAVRHRIAER HRRKRICQQY DILRSILPNL IKMDKASVLG 120 ETIRQVRELK KRVKETKAVC RGSLEGVLPG ESDNLSLGYC ENDGSLLKAT FSCDDRAELI 180 SDLTRAVRTV NGRVVRAEMV FLGGRNKSVL WVKGLSGNEG IGMLKRALKM AVDRPKIKNG 240 KPRFAH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	134	RRKRICQQYDILRSILPNLIKMDKASVLGETIRQVRELKKRVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	4e-29	bHLH family protein