PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273902.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family BBR-BPC
Protein Properties Length: 239aa    MW: 25754.7 Da    PI: 10.6293
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind254.56.4e-7842239104301
       GAGA_bind 104 gtksidslqqlsepqledsave..lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196
                     g +s++  q ++ep l   ++   ++ +e  +++ + ++  ++ +++ + k++++   k+ + k++kkk++++kk + +    +++++ekk++++
  XP_021273902.1  42 GLSSLQGAQIHHEPGLVVAPIRsiAPTTESGKNNDLGSKSAKVGKQNPSVKGSNQIASKVLRPKQPKKKPSVPKKAKGTII--PEARREKKNLNI 134
                     55666666666666665555554355666666777777777777777777799999999999******9999866555554..89********** PP

       GAGA_bind 197 vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291
                      l+g ++D s++P P+CsCtG+ r+CYkWG+GGWqS+CCt++iS yPLP+s++r+gaR+agrKmS+ga+ klL +LaaeG+dls+pvDLkdhWA+
  XP_021273902.1 135 DLDGTNFDFSGVPSPICSCTGVARVCYKWGAGGWQSSCCTINISEYPLPMSSTRPGARMAGRKMSNGAYLKLLLRLAAEGHDLSHPVDLKDHWAR 229
                     *********************************************************************************************** PP

       GAGA_bind 292 HGtnkfvtir 301
                     HGtnkfvti+
  XP_021273902.1 230 HGTNKFVTIK 239
                     *********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MVAMKMGSYS NKSMMPETNT GSSVSPFSLF YTGNYIPTSR PGLSSLQGAQ IHHEPGLVVA  60
PIRSIAPTTE SGKNNDLGSK SAKVGKQNPS VKGSNQIASK VLRPKQPKKK PSVPKKAKGT  120
IIPEARREKK NLNIDLDGTN FDFSGVPSPI CSCTGVARVC YKWGAGGWQS SCCTINISEY  180
PLPMSSTRPG ARMAGRKMSN GAYLKLLLRL AAEGHDLSHP VDLKDHWARH GTNKFVTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.39e-73BBR-BPC family protein